BtaEX6108958 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18401591-18406490:+
Coord C1 exon
chr25:18401591-18401670
Coord A exon
chr25:18403871-18403994
Coord C2 exon
chr25:18406410-18406490
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACACTTTGCCTTCTGCTCAGTCT
3' ss Score
5.32
5' ss Seq
GCGGTAGGT
5' ss Score
9
Exon sequences
Seq C1 exon
ACATTTTTCAAATATCCAATTACCCAATGCCTTGCTGCACCTTCTGTATATCGAATGATTTTGCAGCAGAATTACACCAG
Seq A exon
TCTTAGGTTCCCCACTCTGGAACACTGCTGTACTGGTGGGGAAGCCCTGCTGCCCGAGGAGCAAGAACAGTGGAAAAGACAGACAGGTGTTCTGCTCTACCAGGCCTATGGACAGTCAGAAGCG
Seq C2 exon
GGAATAAGCTGTGGCACTCTCCGGGGGATGAAGATCAAGCCAGGTTCCATGGGGAAGGCCATCCCACCCTTTGACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417-'9-23,'9-21,11-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAATATCCAATTACCCAATGCCT
R:
TGAATGTCAAAGGGTGGGATGG
Band lengths:
154-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]