RnoEX6004591 @ rn6
Exon Skipping
Gene
ENSRNOG00000042084 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:RGD Symbol;Acc:708383]
Coordinates
chr1:189386383-189389403:+
Coord C1 exon
chr1:189386383-189386462
Coord A exon
chr1:189388259-189388382
Coord C2 exon
chr1:189389323-189389403
Length
124 bp
Sequences
Splice sites
3' ss Seq
CATATTTGTCTTCCCCTAAGTCT
3' ss Score
4.45
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
ACACTGTTCAAATACCCTATCACTCAATGCCTTGCTGCCCCAGCCGTGTATCGAATGGTTCTTCAGAAGAATATCTCCAA
Seq A exon
TCTCAGGTTCCCCACCCTGGAGCATTGCGCAACTGGTGGAGAGAGCCTGCTGCCTGAGGAATATGAGCAGTGGAAGCAAAGGACAGGCCTTTCCATTCATGAGGTCTATGGACAGTCAGAAACG
Seq C2 exon
GGGATCACCTGTGCCATCTTCCGGGAAATGAAGGTCAAGCGAGGCTCCATAGGGAAGGCCATTTTACCCTTTGACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042084-'36-38,'36-36,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGTTCAAATACCCTATCACTCA
R:
TCAAAGGGTAAAATGGCCTTCCC
Band lengths:
154-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]