Special

HsaEX0002094 @ hg38

Exon Skipping

Gene
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr16:20627189-20661873:-
Coord C1 exon
chr16:20661794-20661873
Coord A exon
chr16:20640461-20640584
Coord C2 exon
chr16:20627189-20627316
Length
124 bp
Sequences
Splice sites
3' ss Seq
GCACCTTGTCTTCCTCTAAGCAT
3' ss Score
4.33
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
ACATTGTTGAAATACCCCATTAACCACTTTTGGGGGGTATCATCTATATATCGAATGATTCTGCAGCAGGATTTCACCAG
Seq A exon
CATCAGGTTCCCTGCCCTGGAGCACTGCTATACTGGCGGGGAGGTCGTGTTGCCCAAGGATCAGGAGGAGTGGAAAAGACGGACGGGCCTTCTGCTCTACGAGAACTATGGGCAGTCGGAAACG
Seq C2 exon
GGTGACCCAGAGAAGACAGCTAAAGTGGAATGTGGGGACTTCTACAACACTGGGGACAGAGGTAAGATGGATGAAGAGGGCTACATTTGTTTCCTGGGGAGGAGTGATGACATCATTAATGCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166743_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.092
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=FE(25.7=100)
A:
PF0050123=AMP-binding=FE(39.0=100)
C2:
PF0050123=AMP-binding=PD(0.1=0.0),PF0050123=AMP-binding=PD(91.3=95.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAAATACCCCATTAACCACT
R:
CCAGAGGCATTAATGATGTCATCAC
Band lengths:
204-328
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development