MmuEX0003596 @ mm10
Exon Skipping
Gene
ENSMUSG00000033533 | Acsm1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:MGI Symbol;Acc:MGI:2152200]
Coordinates
chr7:119652554-119659200:+
Coord C1 exon
chr7:119652554-119652633
Coord A exon
chr7:119654332-119654455
Coord C2 exon
chr7:119659101-119659200
Length
124 bp
Sequences
Splice sites
3' ss Seq
CATGCGTGCCTTTCCCAAAGCCT
3' ss Score
6.63
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GTACTGTTCAAATACCCCATCACTCAGTGCCTTGCTGCCCCAGGCGTGTATCGAATGGTTCTTCAGCAGAAAACCTCCAA
Seq A exon
CCTCAGGTTCCCCACCCTTGAGCATTGCACTACTGGTGGGGAGAGCCTGCTGCCTGAGGAGTATGAGCAGTGGAAGCAAAGGACAGGTCTTTCCATCCACGAGGTCTATGGACAGTCAGAAACG
Seq C2 exon
GTATCGCATCGGGCCTGTAGAGGTGGAGAACGCCTTGGCGGAGCACCCAGCAGTGGCAGAGTCTGCGGTGGTGAGCAGCCCGGACAAGGATCGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033533_MULTIEX2-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(10.0=100)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTCAAATACCCCATCACTCA
R:
CTCTCCTCGATCCTTGTCCGG
Band lengths:
178-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types