BtaEX6108960 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18398657-18401670:+
Coord C1 exon
chr25:18398657-18398797
Coord A exon
chr25:18399559-18399718
Coord C2 exon
chr25:18401591-18401670
Length
160 bp
Sequences
Splice sites
3' ss Seq
CAACTGTATTTTGGAGACAGCAG
3' ss Score
-2.77
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATCAGCCTCCCCAGATCACATCTGTATTAAGTCAAAGACCCTGGACCCAATGGCCATCTTCTTCACCAGTGGGACCACGGGCTTCCCCAAGATGGCAAAGCACAGCCACGGATTCGCTTTACGATCCTATTTCCCAGCATG
Seq A exon
CAGGAAATTGTTGCAGCTGAAGATGTCTGATGTCTTCTGGTGCCTGTCAGACACAGGCTGGATTCTGGCTGCCTTGGGGTCCCTGCTTGAACCATGGACAGCGGGGTCTACAGTCTTTGCTCATCATCTGCCTCAGTTTGACCCTAAGGTCATTATAGAG
Seq C2 exon
ACATTTTTCAAATATCCAATTACCCAATGCCTTGCTGCACCTTCTGTATATCGAATGATTTTGCAGCAGAATTACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417-'7-19,'7-15,8-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.4=100)
A:
PF0050123=AMP-binding=FE(12.8=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCTCCCCAGATCACAT
R:
CTGGTGTAATTCTGCTGCAAA
Band lengths:
221-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]