RnoEX6004593 @ rn6
Exon Skipping
Gene
ENSRNOG00000042084 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:RGD Symbol;Acc:708383]
Coordinates
chr1:189374697-189386462:+
Coord C1 exon
chr1:189374697-189374837
Coord A exon
chr1:189376213-189376372
Coord C2 exon
chr1:189386383-189386462
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGGGGTTTTTTTTGAGTTAGCAG
3' ss Score
-2.36
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATCAGCATCCCCAGACCATACCTGTGTTAAGTCAAAGATGAAGGACCCCATGGTCATCTTCTTCACCAGCGGGACCACAGGTTACCCCAAGATGGCAAAGCACAACCAAGGACTTGCTTTCCGGTCTTCTGTGCCTTCATG
Seq A exon
CAGAAAATTTTTGAAGCTGAAGACATCTGATGTCATTTGGTGCATGTCAGACCCAGGATGGATTCTGGCTACTGTGGGATGCCTGCTCGAACCCTGGACAGCAGGTGCTACAGTCTTCGTTCACAACCTCCCTCAGTTTGACCCCAAAGTCATTGTAGAG
Seq C2 exon
ACACTGTTCAAATACCCTATCACTCAATGCCTTGCTGCCCCAGCCGTGTATCGAATGGTTCTTCAGAAGAATATCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042084-'33-35,'33-31,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.4=100)
A:
PF0050123=AMP-binding=FE(12.8=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCATCCCCAGACCATACC
R:
TCTTCTGAAGAACCATTCGATACACG
Band lengths:
210-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]