HsaEX0002093 @ hg19
Exon Skipping
Gene
ENSG00000166743 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:18049]
Coordinates
chr16:20673116-20682993:-
Coord C1 exon
chr16:20682853-20682993
Coord A exon
chr16:20681149-20681308
Coord C2 exon
chr16:20673116-20673195
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCACTGCATTTTGGAGTTAGTAG
3' ss Score
-3.64
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATCAGCATCCCCAGAACACACCTGTGTTAAGTCAAAGACCTTGGACCCAATGGTCATCTTCTTCACCAGTGGGACCACAGGCTTCCCCAAGATGGCAAAACACTCCCATGGGTTGGCCTTACAACCCTCCTTCCCAGGAAG
Seq A exon
TAGGAAATTACGGAGCCTGAAGACATCTGATGTCTCCTGGTGCCTGTCGGACTCAGGATGGATTGTGGCTACCATTTGGACCCTGGTAGAACCATGGACAGCGGGTTGTACAGTCTTTATCCACCATCTGCCACAGTTTGACACCAAGGTCATCATACAG
Seq C2 exon
ACATTGTTGAAATACCCCATTAACCACTTTTGGGGGGTATCATCTATATATCGAATGATTCTGCAGCAGGATTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166743_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.3=100)
A:
PF0050123=AMP-binding=FE(12.8=100)
C2:
PF0050123=AMP-binding=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCATCCCCAGAACACAC
R:
CTGGTGAAATCCTGCTGCAGA
Band lengths:
221-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)