MmuEX6013588 @ mm9
Exon Skipping
Gene
ENSMUSG00000033533 | Acsm1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:MGI Symbol;Acc:MGI:2152200]
Coordinates
chr7:126781579-126796147:+
Coord C1 exon
chr7:126781579-126781719
Coord A exon
chr7:126784089-126784248
Coord C2 exon
chr7:126796068-126796147
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGAGTTAGCAG
3' ss Score
0.54
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATCAGCATCCCCAGACCATACTTGTATTAAGTCAAAGATGAAGGATCCCATGGCCATCTTCTTCACCAGTGGGACCACAGGCTACCCCAAGATGGCAAAGCACAACCAGGGACTTGCCTTCCGGTCATATATCCCTTCATG
Seq A exon
CAGAAAATTATTGAAGCTGAAGACATCTGACATCTTGTGGTGCATGTCAGACCCAGGATGGATTCTGGCTACCGTGGGGTGCCTGATCGAGCCATGGACATCAGGATGTACAGTCTTCATCCACCACCTCCCTCAATTCGACCCCAAAGTCATTGTAGAG
Seq C2 exon
GTACTGTTCAAATACCCCATCACTCAGTGCCTTGCTGCCCCAGGCGTGTATCGAATGGTTCTTCAGCAGAAAACCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033533-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.4=100)
A:
PF0050123=AMP-binding=FE(12.8=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCATCCCCAGACCATACT
R:
GGAGGTTTTCTGCTGAAGAACCA
Band lengths:
218-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: