BtaEX6109022 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19112119-19122054:-
Coord C1 exon
chr25:19121843-19122054
Coord A exon
chr25:19117753-19117844
Coord C2 exon
chr25:19112119-19112233
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTCTCTTCGCAGATC
3' ss Score
12.94
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GACCCCTCTTTTTACTGAATGCTGAGGAAATCGCAGAAGAAATAGGGAATATGTGGAGGACAATATACAAATTGACCAAGACCTTAGCGGACATGCCTGCACCTAGGCGCTTAGCAGAGAATGTGAAAATCAAGATTGATAAATTCAAGCAGCACATCCCTATCCTCACCATTTCCTGCAACCCAGGAATGAAAGACCGGCACTGGCAGCAG
Seq A exon
ATCAGTGAGATTGTCGGCTATGAAATAAAGCCCACTGAAACGACTTGTCTCTCAAATATGCTGGAATTTGGATTTGGCAAATTCATTGAAAA
Seq C2 exon
ACTGGAGCCCATCGGTGCAGCTGCCAGTAAGGAATACTCTCTGGAGAAAAACTTGGAGAAAATGAAGTTAGACTGGGTTAACATGACGTTCAACTTTGTGAAGTACAGGGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.0=100)
A:
PF083938=DHC_N2=FE(7.3=100)
C2:
PF083938=DHC_N2=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAAGACCTTAGCGGACA
R:
ATTCCTTACTGGCAGCTGCAC
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]