HsaEX6042652 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21086768-21098381:-
Coord C1 exon
chr16:21098170-21098381
Coord A exon
chr16:21092957-21093048
Coord C2 exon
chr16:21086768-21086882
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTCTTTTCTTTGCAGATC
3' ss Score
14.01
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GACCCCTCTTCTTACTGAATGCTGAGCAAATTGCGGAGGAGATAGGGAATATGTGGAGGACAACGTATAAACTGATCAAGACCTTGTCTGATGTGCCTGCACCCAGGCGCTTAGCAGAGAATGTGAAGATCAAGATCGATAAGTTCAAGCAGTACATTCCCATCCTCAGTATTTCCTGCAACCCAGGAATGAAAGACCGACACTGGCAGCAG
Seq A exon
ATCAGTGAGATTGTTGGCTATGAGATAAAGCCCACCGAAACGACCTGCCTCTCAAATATGCTCGAATTTGGATTCGGCAAATTCGTTGAAAA
Seq C2 exon
ATTGGAGCCCATTGGTGCAGCTGCCAGCAAGGAATACTCTCTGGAGAAAAACTTGGATAGAATGAAGTTGGATTGGGTTAACGTGACGTTCAGCTTCGTGAAATACAGGGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.1=100)
A:
PF083938=DHC_N2=FE(7.3=100)
C2:
PF083938=DHC_N2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTGTCTGATGTGCCTGC
R:
AGTATTCCTTGCTGGCAGCTG
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)