MmuEX6013636 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127195205-127202904:-
Coord C1 exon
chr7:127202693-127202904
Coord A exon
chr7:127198117-127198208
Coord C2 exon
chr7:127195205-127195319
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCCTTTCTTTGCAGATC
3' ss Score
12.97
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
Exon sequences
Seq C1 exon
GCCCCCTCTACTTAATGAATGCTGAGCAAATCGCAGAGGAGATAGGGAATATGTGGAGGACAACCTACAAGTTGACCAAGACCTTGATCGATGTGCCTGCGCCCAAGCGCTTAGCAGAGAATGTCAAGTTGAAGATTGAGAAGTTCAAGCAGCATATTCCCATCCTGAATATCGCCTGCAACCCCGGGATGAAGGATCGGCACTGGCAACAG
Seq A exon
ATCAGTGACATTGTTGGCTATGAGATAAAGCCCACAGAGACCACGTGCCTCGCCAATATGCTGGAATATGGATTCGGCAAATTTGTTGATAA
Seq C2 exon
GCTGGAGCCCATTGGGGCAGCTGCCAGCAAGGAGTATTCTCTGGAGAAAAACTTGGAGAAGATGAAGGCAGACTGGGTCAATATGTGCTTCAGTTTCGTGAAGTACAGGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.2=100)
A:
PF083938=DHC_N2=FE(7.4=100)
C2:
PF083938=DHC_N2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTGATCGATGTGCCTGC
R:
AATACTCCTTGCTGGCAGCTG
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: