GgaEX6013267 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15024712-15025703:-
Coord C1 exon
chr14:15025492-15025703
Coord A exon
chr14:15025122-15025213
Coord C2 exon
chr14:15024712-15024826
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTACTTCATTTTCAGATT
3' ss Score
11.23
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
GATTTCTCCAGAAATTGAATGCTGATGAAATTACTGAAGAAATTGGCGAGATGTGGAGAACAATGTACAAGCTCAGCAAGAGTTTTCCAGACTTGGCTGGGCCGAGGCGCTTAGCAGAAAGCACAAAATACAAACTCGATAAGTTTAAGCAGCATCTTCCTGTCCTGTCCCTTGCCTGCAATCGTGGAATGAAGGAGAGGCATTGGGAGCAG
Seq A exon
ATTAGTGAAGTTGTAGGATGTGAAGTCAGACTGAACGAAACTACTACCCTTCTAAACATGCTGGAATTGGGACTCTCAAAATACATTGATCA
Seq C2 exon
GCTGGAACCCATCGGAGCAGCTGCAAGTAAGGAGTATTCTTTAGAGAAGTCAATAGAGAAAATGAAATTAGAGTGGGTCAGCGTGCAGTTCAGTCTGGTGAAATACAGAGATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'21-22,'21-20,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.9=100)
A:
PF083938=DHC_N2=FE(7.2=100)
C2:
PF083938=DHC_N2=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCATCTTCCTGTCCTGT
R:
TTCACCAGACTGAACTGCACG
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]