DreEX6096516 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39568720-39570910:+
Coord C1 exon
chr24:39568720-39568931
Coord A exon
chr24:39570596-39570687
Coord C2 exon
chr24:39570796-39570910
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTGCCTCATAATAGATT
3' ss Score
6.48
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
GTCCATTCCAGCAACTGAATGCAGAGACCGTATCAGAAGATTTAGGAAACATGTGGCGCACTATGTACAAACTTGCAAAGTCATTTCCAGAGCGGACGGCTCCCGGACGCGTCACAGAGAACTTTAAGAAAAAGATTGACAAATTCAAACAACACCTACCCATTCTGACAACTATCTGCAATCCAGGCCTGAAGGACAGACACTGGGAGATG
Seq A exon
ATTAGTAATACTGTGGGATTTGATGTAAAGCCGGATGAGAACACTCCACTCATCAAAATGGTGGAACTAGGATTGTCAAAATATTCTGACCA
Seq C2 exon
ACTGGAGGAAATCGGTGCTTCTGCCAGTAAGGAATATTCTCTGGAAAAATCTCTGGAGAAAATGACACGGGAGTGGGCAGAGCTACACTTTATGTTTGCACCCTATAAGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(18.1=100)
A:
PF083938=DHC_N2=FE(7.8=100)
C2:
PF083938=DHC_N2=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCATTTCCAGAGCGGACG
R:
TTCCTTACTGGCAGAAGCACC
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]