BtaEX6109028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19096104-19102129:-
Coord C1 exon
chr25:19101928-19102129
Coord A exon
chr25:19099956-19100048
Coord C2 exon
chr25:19096104-19096214
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTCTCAACCTGCAGGGC
3' ss Score
12.01
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTCTTCTTCCTATCAAATGATGAGCTGCTGGAGATATTGTCAGAGACAAAGGACCCTCTCCGGGTGCAGCCACACTTGAAGAAGTGCTTTGAAGGAATTGCCAAGCTGGAGTTTACAGACAGTCTGGAGATTGTGGGCATGATCAGCTCAGAAAAAGAAATCATTCCATTCAAACAGAAAATCTACCCAGCTCAAGCCAAA
Seq A exon
GGCATGGTGGAAAAATGGCTCCTGCAGGTGGAACAGATGATGCTTGCCAGTATGCAGGAAGTTATTAAACTTGGGATTGAAGCATATGTCCAG
Seq C2 exon
GTCCCCCGTAATCAGTGGGTCTTGCAATGGCCTGGCCAGGTGGTTATCTGTGTCTCCTCCATCTTTTGGACCCAGGAGGTTTCCCAAGCCCTGATTGAAAAGACCCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'26-28,'26-27,27-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.3=100)
A:
PF083938=DHC_N2=PD(7.0=93.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGCCACACTTGAAGAA
R:
GCCATTGCAAGACCCACTGAT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]