DreEX6096510 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39574543-39577317:+
Coord C1 exon
chr24:39574543-39574744
Coord A exon
chr24:39577032-39577124
Coord C2 exon
chr24:39577207-39577317
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTTTGTAATGTGAATTTTAGGGA
3' ss Score
7.79
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GTTTTTCTTCCTGTCTAATGATGAGATGTTGGAGATCTTGTCTGAGACGAAGGATCCGCTGCGTGTTCAGCCTCATCTTAAAAAGTGTTTTGAGGGCATCGCTAAGCTAGAATTCACCCCTGACCTGGAGATCACAGGAATGATCAGCTCAGAGAAAGAGATTGTCCCCTTAATAGAGACCATCTACCCAGTTAAAGCTAAG
Seq A exon
GGAATGGTCGAGAAGTGGCTTCTGCAGGTTGAAAACACAATGCTGATGAGTATCAGAGCTGTCATAAAACAAGGAATGGAGCAGTACTCAGAG
Seq C2 exon
ATGCCGAGGAAGAAATGGGTGCTGCTGTGGCCTGGTCAGGTTGTAATCTGTGCGTCCTGTATCTTCTGGACAAGTGAAGTATCTGATGCAATACAGAACAACACTCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.4=100)
A:
PF083938=DHC_N2=PD(7.5=93.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTGTTCAGCCTCATCTT
R:
CAGCAGCACCCATTTCTTCCT
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]