MmuEX6013643 @ mm10
Exon Skipping
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:120035345-120041061:-
Coord C1 exon
chr7:120040969-120041061
Coord A exon
chr7:120039333-120039443
Coord C2 exon
chr7:120035345-120035459
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCCCCATTGCCCTTTCCCAGGTC
3' ss Score
9.67
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGCATGGTGGAGAAGTGGCTGCAGCAGGTGGAGCAGGTGATGTTGGCCAGCATGCGGCAAGTTATTGAAAATGGGATTGAAGCTTATGTCCAG
Seq A exon
GTCCCTCGTAATGCCTGGGTCTTGGAGTGGCCAGGCCAGGTAGTTATCTGTGTCTCCTCCATCTTTTGGACCAGAGAAGTGTCTGAAGCCCTAGTTGAAGACACCCTTACA
Seq C2 exon
GACTTTCTGAAAAAGAGCAATGACCAGATCGCACAGATCGTTGAGCTGGTTCGAGGGAAGCTGAGCAGTGGGGCGAGGCTCACTCTGGGAGCCCTCACTGTCATCGATGTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'34-36,'34-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(7.1=93.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGGAGAAGTGGCTGC
R:
GACATCGATGACAGTGAGGGC
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types