DreEX6096509 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39577032-39577528:+
Coord C1 exon
chr24:39577032-39577124
Coord A exon
chr24:39577207-39577317
Coord C2 exon
chr24:39577414-39577528
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATAATTTGACATCTTTCAGATG
3' ss Score
7.41
5' ss Seq
CCTGTGAGC
5' ss Score
3.28
Exon sequences
Seq C1 exon
GGAATGGTCGAGAAGTGGCTTCTGCAGGTTGAAAACACAATGCTGATGAGTATCAGAGCTGTCATAAAACAAGGAATGGAGCAGTACTCAGAG
Seq A exon
ATGCCGAGGAAGAAATGGGTGCTGCTGTGGCCTGGTCAGGTTGTAATCTGTGCGTCCTGTATCTTCTGGACAAGTGAAGTATCTGATGCAATACAGAACAACACTCTTCCT
Seq C2 exon
TCTTATGTTGAGCAGAGCAACGCTCAGATCACTGATATAGTTGAGCTGGTGAGAGGGAAGTTGTCAGGCGGAGCCAGAATGACTCTGGGAGCTCTTATTGTCATTGATGTTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(7.5=93.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGTCGAGAAGTGGCTT
R:
ACATCAATGACAATAAGAGCTCCCA
Band lengths:
203-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]