HsaEX6042657 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21065741-21071677:-
Coord C1 exon
chr16:21071585-21071677
Coord A exon
chr16:21069407-21069517
Coord C2 exon
chr16:21065741-21065855
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCCCACTGTGCTTTTCCAGGTC
3' ss Score
11.66
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGCATGGTGGAAAAGTGGCTCCAGCAGGTGGAGCAGATGATGCTGGCCAGTATGCGAGAAGTCATTGGACTTGGGATTGAAGCATATGTCAAG
Seq A exon
GTCCCTCGAAATCACTGGGTCTTACAGTGGCCTGGACAGGTGGTTATCTGTGTCTCCTCCATCTTTTGGACCCAGGAGGTGTCCCAAGCCCTGGCGGAAAATACCTTACTG
Seq C2 exon
GATTTTCTGAAAAAGAGCAATGATCAGATTGCGCAGATTGTCCAGCTGGTGCGAGGGAAGCTGAGCAGTGGAGCTCGACTCACTCTCGGGGCCCTCACGGTCATCGATGTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'30-32,'30-31,31-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(7.1=93.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGGAAAAGTGGCTCCA
R:
GTGGACATCGATGACCGTGAG
Band lengths:
205-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)