BtaEX6109029 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19088100-19100048:-
Coord C1 exon
chr25:19099956-19100048
Coord A exon
chr25:19096104-19096214
Coord C2 exon
chr25:19088100-19088214
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCTGCGCTTTCCCAGGTC
3' ss Score
9.72
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGCATGGTGGAAAAATGGCTCCTGCAGGTGGAACAGATGATGCTTGCCAGTATGCAGGAAGTTATTAAACTTGGGATTGAAGCATATGTCCAG
Seq A exon
GTCCCCCGTAATCAGTGGGTCTTGCAATGGCCTGGCCAGGTGGTTATCTGTGTCTCCTCCATCTTTTGGACCCAGGAGGTTTCCCAAGCCCTGATTGAAAAGACCCTACCG
Seq C2 exon
GATTTTCTGAAGAAGAGCAATGATCAGATTGCACAGATTGTTCAGCTGGTTCGAGGGAAGCTGAGCAGTGGAGCTCGACTCACCCTCGGGGCCCTCACAGTCATTGATGTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(7.0=93.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGTGGAAAAATGGCTC
R:
CATCAATGACTGTGAGGGCCC
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]