MmuEX6013642 @ mm10
Exon Skipping
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:120039333-120042276:-
Coord C1 exon
chr7:120042075-120042276
Coord A exon
chr7:120040969-120041061
Coord C2 exon
chr7:120039333-120039443
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTACTTCCCCACAGGGC
3' ss Score
12.41
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTCTTCTTCCTGTCAAATGATGAGCTCCTGGAGATCTTGTCAGAGACAAAGGACCCACTCCGAGTACAGCCACACTTGAAGAAGTGCTTCGAAGGAATTGCCAAACTGGAGTTTACAGACAATCTGGAAATCAAGGGCATGATCAGCTCAGAAAAAGAAACTGTTCCATTCATACAGACAATCTATCCAGTGAAAGCCAAG
Seq A exon
GGCATGGTGGAGAAGTGGCTGCAGCAGGTGGAGCAGGTGATGTTGGCCAGCATGCGGCAAGTTATTGAAAATGGGATTGAAGCTTATGTCCAG
Seq C2 exon
GTCCCTCGTAATGCCTGGGTCTTGGAGTGGCCAGGCCAGGTAGTTATCTGTGTCTCCTCCATCTTTTGGACCAGAGAAGTGTCTGAAGCCCTAGTTGAAGACACCCTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'33-35,'33-34,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.4=100)
A:
PF083938=DHC_N2=PD(7.1=93.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGTACAGCCACACTTGA
R:
TCCAAGACCCAGGCATTACGA
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types