GgaEX6013272 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15018764-15020750:-
Coord C1 exon
chr14:15020549-15020750
Coord A exon
chr14:15019158-15019250
Coord C2 exon
chr14:15018764-15018874
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTTCCTACCTGAAGGGC
3' ss Score
7.68
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATTCTTTTTCCTGTCTAATGATGAGCTGCTGGAAATACTCTCTGAAACGAAGGATCCCCTTCGAGTGCAGCCACATTTAAAGAAGTGTTTCGAGGGAATTGCTCAGCTGGAGTTCACTGAGAATTTGGAGATTCTAGGCATGATCAGTTCGGAGAAGGAAATTGTTCCTTTCATAGAAAAAATCTATCCTACAAATGCAAAA
Seq A exon
GGCATGGTAGAAAAATGGCTTTTGCAAGTTGAGGAAATGATGCTGGCCAGCGTAAGACAAGTTCTTCAAGATGGCATAGAAGGATACGTCAAG
Seq C2 exon
GTTCCTCGAAAAGCTTGGGTACTGCAGTGGCCCGGGCAGGTGGTGGTTTGTGTTTCATCCATTTACTGGACAGAAGCAGTATCTGAGGCCATAAGGAAAGGAACCTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.2=100)
A:
PF083938=DHC_N2=PD(7.0=93.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGAGTGCAGCCACATTT
R:
CCACTGCAGTACCCAAGCTTT
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]