BtaEX6110047 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037489 | CRCP
Description
Bos taurus CGRP receptor component (CRCP), mRNA. [Source:RefSeq mRNA;Acc:NM_001077870]
Coordinates
chr25:28275534-28288563:+
Coord C1 exon
chr25:28275534-28275632
Coord A exon
chr25:28276936-28277030
Coord C2 exon
chr25:28288506-28288563
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTTTTCCGTAGACA
3' ss Score
12.41
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGTTCCAGTTACTAACTGACTTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGTTCTGGGCAACAGAACTTGAATACTATCACATATGAA
Seq A exon
ACATTAAAATACATATCAAAAACACCATGTAAGCACCAGAGTCCTGAGATTGTGAGAGAATTTCTGACAGCAATGAAAAGCCACAAGTTGACCAA
Seq C2 exon
AGCTGAAAAGCTTCAGCTGCTGAATCACAGGCCTGTGACTGCTGTTGAGATCCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037489-'7-7,'7-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.156 C2=0.300
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
A:
PF0387411=RNA_pol_Rpb4=FE(27.0=100),PF149421=Muted=PU(4.5=9.4)
C2:
PF0387411=RNA_pol_Rpb4=FE(16.5=100),PF149421=Muted=FE(28.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAACTGACTTGAAAGAGCAGCG
R:
CTGGATCTCAACAGCAGTCACA
Band lengths:
143-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]