RnoEX0024426 @ rn6
Exon Skipping
Gene
ENSRNOG00000000901 | Crcp
Description
CGRP receptor component [Source:RGD Symbol;Acc:620753]
Coordinates
chr12:30136740-30148285:-
Coord C1 exon
chr12:30148187-30148285
Coord A exon
chr12:30144009-30144103
Coord C2 exon
chr12:30136740-30136797
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTATTTATTCTTTAGACA
3' ss Score
7.53
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGTTCCAGTTACTGACAGACCTCAAAGAGCAGCGGAAGGAGAGCGGGAAGAACAAGCATAGCGCCGGGCAGCAGAACTTGAACGCCATCACCTACGAG
Seq A exon
ACATTAAAATACATATCGAAAACTCCATGTAAGAACCAGAGTCCGGCGATTGTCCAAGAATTCCTCACAGCAATGAAGAGCCACAAGCTGACCAA
Seq C2 exon
AGCCGAGAAGCTTCAGCTGCTGAATCACAGGCCAATGACCGCTGTTGAGATCCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000901-'11-7,'11-6,15-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.021 C2=0.300
Domain overlap (PFAM):
C1:
PF061336=DUF964=FE(45.7=100),PF117613=CbiG_mid=FE(47.8=100),PF0387411=RNA_pol_Rpb4=FE(74.4=100)
A:
PF061336=DUF964=FE(30.1=100),PF0387411=RNA_pol_Rpb4=FE(27.0=100)
C2:
PF061336=DUF964=PD(6.8=35.0),PF0387411=RNA_pol_Rpb4=FE(16.5=100)
Main Skipping Isoform:
ENSRNOT00000001202fB3572
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCAGTTACTGACAGACCT
R:
CTGGATCTCAACAGCGGTCAT
Band lengths:
154-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]