GgaEX1017535 @ galGal3
Exon Skipping
Gene
ENSGALG00000002587 | CRCP
Description
NA
Coordinates
chr19:4928865-4942986:+
Coord C1 exon
chr19:4928865-4928963
Coord A exon
chr19:4932627-4932721
Coord C2 exon
chr19:4942929-4942986
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGCTATTCCTTGCAGACA
3' ss Score
9.24
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGTTCCAGCTACTCACTGATCTTAAGCAGCAGCGCAAAGAGAGTGGAAAAAGCAAGCAGAGCTCTGGTCAGCAGAATCTGAACACAATCATGTATGAG
Seq A exon
ACACTGAAATACATCTCAAAAACACCGTGCAGATACCAGAGTCCTGAGACTGTCAGAGAGTTCCTCATTGCAATGAAGGGCCATAAGCTGACCAA
Seq C2 exon
GGCTGAAAAGCTGCAGTTGCTGAACCACAGGCCTGTGACAGCAGTTGAAATACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002587-'3-6,'3-3,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF102924=7TM_GPCR_Srab=FE(22.7=100),PF0387411=RNA_pol_Rpb4=FE(28.1=100)
A:
PF102924=7TM_GPCR_Srab=FE(22.0=100),PF0387411=RNA_pol_Rpb4=FE(27.2=100),PF149421=Muted=PU(4.7=9.4)
C2:
PF102924=7TM_GPCR_Srab=FE(13.5=100),PF0387411=RNA_pol_Rpb4=FE(16.7=100),PF149421=Muted=FE(29.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCAGCTACTCACTGATCT
R:
TATTTCAACTGCTGTCACAGGCC
Band lengths:
151-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]