DreEX6085292 @ danRer10
Exon Skipping
Gene
ENSDARG00000069373 | crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:ZFIN;Acc:ZDB-GENE-060825-150]
Coordinates
chr21:31211526-31214668:-
Coord C1 exon
chr21:31214570-31214668
Coord A exon
chr21:31211899-31211993
Coord C2 exon
chr21:31211526-31211583
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGAAATCTCTGCCTCAACAGACC
3' ss Score
7.37
5' ss Seq
TAAGTACTT
5' ss Score
-1.39
Exon sequences
Seq C1 exon
GTCTATCAGCTGCTGACAGACCTGAAAGAAAAAAGAAAGGAGATGGTTAAAAATAAGCACAGCACCGGGCAGCAGAATCTCAACACCATCATGTATGAG
Seq A exon
ACCCTGAAGTACCTCTCTAAGACGCCATGTGTTCATCAGAAACCAGAGACAGTGAAGGAGTTCCTCACCGCCATGCTGCCTCACAAACTTACTAA
Seq C2 exon
AGCAGAGAAGCTGCAGCTCTTAAACCACAGACCTCAGACTGCTGTTGAGATCCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069373-'3-7,'3-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.250 C2=0.550
Domain overlap (PFAM):
C1:
PF061336=DUF964=FE(43.2=100),PF0387411=RNA_pol_Rpb4=FE(27.8=100)
A:
PF061336=DUF964=PD(33.8=78.1),PF0387411=RNA_pol_Rpb4=FE(27.0=100)
C2:
PF0387411=RNA_pol_Rpb4=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACAGACCTGAAAGAAA
R:
TGGATCTCAACAGCAGTCTGAG
Band lengths:
143-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]