GgaEX1017535 @ galGal4
Exon Skipping
Gene
ENSGALG00000002587 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:HGNC:17888]
Coordinates
chr19:4962104-4976225:+
Coord C1 exon
chr19:4962104-4962202
Coord A exon
chr19:4965866-4965960
Coord C2 exon
chr19:4976168-4976225
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGCTATTCCTTGCAGACA
3' ss Score
9.24
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGTTCCAGCTACTCACTGATCTTAAGCAGCAGCGCAAAGAGAGTGGAAAAAGCAAGCAGAGCTCTGGTCAGCAGAATCTGAACACAATCATGTATGAG
Seq A exon
ACACTGAAATACATCTCAAAAACACCGTGCAGATACCAGAGTCCTGAGACTGTCAGAGAGTTCCTCATTGCAATGAAGGGCCATAAGCTGACCAA
Seq C2 exon
GGCTGAAAAGCTGCAGTTGCTGAACCACAGGCCTGTGACAGCAGTTGAAATACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002587_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=FE(28.1=100)
A:
PF0387411=RNA_pol_Rpb4=FE(27.2=100),PF149421=Muted=PU(4.7=9.4)
C2:
PF0387411=RNA_pol_Rpb4=FE(16.7=100),PF149421=Muted=FE(29.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCAGCTACTCACTGATCT
R:
TATTTCAACTGCTGTCACAGGCC
Band lengths:
151-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]