BtaEX6110401 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35074613-35075722:+
Coord C1 exon
chr25:35074613-35074694
Coord A exon
chr25:35075274-35075405
Coord C2 exon
chr25:35075631-35075722
Length
132 bp
Sequences
Splice sites
3' ss Seq
AGTGATCTCTTTTGGGGCAGATC
3' ss Score
6.33
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
GGACCTCGCCCCCAAGGACCGGAATGGCGCATCTGACCCCTTTGTCCGAGTGCGATACAACGGCCGCACGCAGGAGACCTCG
Seq A exon
ATCGTGAAAAAGTCATGCTACCCTCGTTGGAATGAGACGTTTGAGTTCGAGCTGGAGGAGGGGGCGGCGGAGGTGCTGTGCGTGGAGGCCTGGGACTGGGACCTTGTCAGCCGCAACGACTTCCTGGGCAAA
Seq C2 exon
GTGGTGGTCAATGTGCAGAGACTGTGGGCGGCCCAGCGGGAGGAGGGCTGGTTCCGGCTGCAGCCTGACCAGTCCAAGAGCCGGCGGGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448-'10-10,'10-9,12-10=AN
Average complexity
A_S
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(32.9=100)
A:
PF0016825=C2=FE(52.4=100)
C2:
PF0016825=C2=PD(1.2=3.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCGCCCCCAAGGAC
R:
TCTTCCCGCCGGCTCTTG
Band lengths:
173-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]