DreEX6013879 @ danRer10
Exon Skipping
Gene
ENSDARG00000029372 | rasa4
Description
RAS p21 protein activator 4 [Source:ZFIN;Acc:ZDB-GENE-060526-349]
Coordinates
chr5:58658742-58672026:+
Coord C1 exon
chr5:58658742-58658823
Coord A exon
chr5:58658908-58659042
Coord C2 exon
chr5:58671935-58672026
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGATTCTGCTTCCCTCCAGGTG
3' ss Score
12.13
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
AGATCTTGCGAAAAAGGATCGCAACGGGGCCTCTGATCCTTTTGTCCGAGTGAGATACAATGGGAAAACGTATGAGAGCTCG
Seq A exon
GTGGTTAAAAAGTCCTGTTATCCTCGCTGGAACGAGAGTTTTGAGTTTGAACTGGACGAGGCGCTGACTGACAGTCTACTGAGTGTGGAGGTGTGGGACTGGGATCTGGTCAGCAGAAATGACTTCCTGGGAAAG
Seq C2 exon
GTCCTGTTCAACATCAATAAGCTTCAGTCTGCACTGCAAGAGGAGGGCTGGTTCCGCCTGGGGCCTGACAAATCTAAACACAGCGAATATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029372-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(32.5=100)
A:
PF0016825=C2=FE(53.0=100)
C2:
PF0016825=C2=PD(1.2=3.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAAAGGATCGCAACGGGG
R:
ATTCGCTGTGTTTAGATTTGTCAGG
Band lengths:
162-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]