GgaEX6017117 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4171983-4172448:-
Coord C1 exon
chr19:4172367-4172448
Coord A exon
chr19:4172147-4172278
Coord C2 exon
chr19:4171983-4172074
Length
132 bp
Sequences
Splice sites
3' ss Seq
CAAATCCATCTCCTTCACAGGTG
3' ss Score
8.2
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGATTTGGCCAAGAAGGACCGGAACGGTGCATCCGACCCCTTTGTCTGTGTGAGCTACAATGGCAAAACGCAGGAGAGCACC
Seq A exon
GTGGTGAAGAAGTCCTGCTATCCTCGCTGGAACGAAGCCTTTGAGTTTGAGCTGCCCGACCCCCCTGCAGAGAAGCTGTGTGTAGAGGTGTGGGATTGGGACCTCGTCAGCAAGAATGACTTCTTGGGCAAG
Seq C2 exon
GTGGTGGTCAGCGTGCAGGGGCTGCAGGCAGCCGGGCACCAGGAGGGCTGGTTCAGGCTGCAGCCGGACACGGCCAAGCCCAGGGAGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.323
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(32.9=100)
A:
PF0016825=C2=FE(52.4=100)
C2:
PF0016825=C2=PD(1.2=3.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGAAGGACCGGAAC
R:
CTATCCTCCCTGGGCTTGGC
Band lengths:
168-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]