MmuEX0038881 @ mm10
Exon Skipping
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136095527-136098779:+
Coord C1 exon
chr5:136095527-136095608
Coord A exon
chr5:136096661-136096792
Coord C2 exon
chr5:136098688-136098779
Length
132 bp
Sequences
Splice sites
3' ss Seq
CACTATCCCTTTTGGAGCAGGTG
3' ss Score
4.78
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGACTTAGCACCAAAAGATCGGAATGGCGCATCTGACCCTTTTGTCCGAGTGCACTACAATGGCCGGACCCAGGAGACCTCG
Seq A exon
GTGGTGAAGAAATCCTGCTACCCACGCTGGAATGAGACATTTGATTTTGAGCTGGAAAAAGGAGCCTCAGAAGCACTGCTGGTGGAGGCCTGGGACTGGGATCTTGTTAGCCGGAATGACTTTCTAGGCAAA
Seq C2 exon
GTGGCGGTCAATGTCCAGAGACTTTGTTCAGCCCAGCAGGAAGAGGGCTGGTTCCGGCTGCAGCCTGACCAGTCCAAAAGCCGTCAAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952-'15-18,'15-16,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(32.9=100)
A:
PF0016825=C2=FE(52.4=100)
C2:
PF0016825=C2=PD(1.2=3.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTAGCACCAAAAGATCGGA
R:
CTTGACGGCTTTTGGACTGGT
Band lengths:
170-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types