RnoEX0074204 @ rn6
Exon Skipping
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23609992-23612785:-
Coord C1 exon
chr12:23612704-23612785
Coord A exon
chr12:23611901-23612032
Coord C2 exon
chr12:23609992-23610083
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCATTGTCCCTTTGGAGCAGGTG
3' ss Score
6.05
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGACTTAGCACCAAAAGACCGGAATGGCGCATCTGACCCTTTTGTCCGAGTGCACTACAATGGCCGGACCCAGGAGACCTCG
Seq A exon
GTGGTGAAAAAATCCTGCTACCCACGCTGGAATGAGACATTTGAGTTTGAGCTGGAAAAGGGAGCCACAGAAGCACTGCTGGTGGAGGCCTGGGACTGGGATCTTGTTAGCCGGAATGACTTTCTAGGCAAA
Seq C2 exon
GTGGTAGTCAATGTCCAGACACTGTGTTCAGCCCAGCAGGAAGAGGGCTGGTTCCGGCTGCAGCCCGACCAGTCCAAAAGCCGTCAAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431-'8-13,'8-10,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(32.9=100)
A:
PF0016825=C2=FE(52.4=100)
C2:
PF0016825=C2=PD(1.2=3.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTAGCACCAAAAGACCGG
R:
CTTGACGGCTTTTGGACTGGT
Band lengths:
170-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]