BtaEX6111054 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003953 | ZNF316
Description
zinc finger protein 316 [Source:HGNC Symbol;Acc:HGNC:13843]
Coordinates
chr25:39007485-39009482:+
Coord C1 exon
chr25:39007485-39007603
Coord A exon
chr25:39008752-39008878
Coord C2 exon
chr25:39009369-39009482
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGGGTGCTTTGTTTCCTAGGGG
3' ss Score
7.24
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCCTGCAGGCCTTCCGGGCTCCAGCCACGCCGAGGGATGAGGACCTGGAGCGGGAGGGGGAGGGGGACGAAGAGGAGGAGGACGAGGACGAGGTCGACTCCCTGACGTCTGGGTCTCAG
Seq A exon
GGGCTGGTGACCTTTGAAGACGTGGCTGTGTACTTCTCCCTGGAGGAGTGGGAAAGGCTGGACGCAGAGCAGCGGGAGCTCTACAAGGAGGTCATGCGGGAAAACTATGGGATCCTGGTGTCCTTGG
Seq C2 exon
GATACCCAGTCCCCAAGCCGGATCTGATCTTCCGGCTGGAGCAAGGAGAGGAGCCGTGGGTCCCGGACAGCCCGCGTCCCGAGGAGGGAGACATCGTCACTGGCGTCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003953-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.023 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACGCCGAGGGATGAG
R:
CTGTGTAGACGCCAGTGACGA
Band lengths:
210-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]