HsaEX7004035 @ hg38
Exon Skipping
Gene
ENSG00000205903 | ZNF316
Description
zinc finger protein 316 [Source:HGNC Symbol;Acc:HGNC:13843]
Coordinates
chr7:6642964-6644593:+
Coord C1 exon
chr7:6642964-6643073
Coord A exon
chr7:6643822-6643948
Coord C2 exon
chr7:6644480-6644593
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGAGGCTCTGTTTCCCCAGGAG
3' ss Score
7.72
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCCTGCAGGCCTCCCGGGCTCCAGCCACTCCTAGGGATGAGGACCTGGAGGAGGAGGAAGAGGAGGAGGAGGATGAGGACGAGGATGATTTGCTGACGGCTGGGTGTCAG
Seq A exon
GAGCTGGTGACGTTTGAAGATGTGGCTGTGTACTTCTCCCTGGAGGAGTGGGAAAGGCTGGAAGCAGACCAGCGGGGCCTCTACCAGGAAGTCATGCAGGAGAACTATGGGATTCTCGTGTCCTTGG
Seq C2 exon
GATACCCAATTCCCAAGCCCGATCTGATCTTCCGGCTGGAACAAGGGGAAGAACCTTGGGTCCCAGATAGTCCCCGACCTGAGGAAGGAGACATCGTCACTGGCGTCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205903-'14-16,'14-13,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=0.036 C2=0.534
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCACTCCTAGGGATGAG
R:
GTGTAGACGCCAGTGACGATG
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains