MmuEX0053211 @ mm10
Exon Skipping
Gene
ENSMUSG00000046658 | Zfp316
Description
zinc finger protein 316 [Source:MGI Symbol;Acc:MGI:1860402]
Coordinates
chr5:143262793-143264142:-
Coord C1 exon
chr5:143264051-143264142
Coord A exon
chr5:143263296-143263422
Coord C2 exon
chr5:143262793-143262906
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGGGGCTCTGTGTTCCTTAGGGC
3' ss Score
9.26
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCCTACAGACCTCCCGGGTATCTCCCACTACTCAGGATGAAGATGTGGAGGAAGAAGAGGAAGAGGAAGATGAGGAGCATTTCCTGACCCAG
Seq A exon
GGCCTGGTGACTTTTGAAGATGTGGCCGTGTACTTCTCTTTGGAGGAGTGGGAGAGGCTGGGTGTGGACCAGCGGGATCTGTACCGGGAAGTAATGCAGGAGAACTATGGGATCCTGGTCTCCTTGG
Seq C2 exon
GATACCCAATCCCTAAGCCAGATCTGATCTTCCACCTCGAACAAGGAGAAGAACCTTGGGTTGAAGATGGCCCCCATCCCGAGGAGGGAGATGTCGTCACTGGTGTCTACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046658_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.023 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACAGACCTCCCGGG
R:
CGTGTAGACACCAGTGACGAC
Band lengths:
205-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types