RnoEX0101236 @ rn6
Exon Skipping
Gene
ENSRNOG00000001094 | Zfp316
Description
zinc finger protein 316 [Source:RGD Symbol;Acc:1311647]
Coordinates
chr12:13354246-13355604:+
Coord C1 exon
chr12:13354246-13354337
Coord A exon
chr12:13354938-13355064
Coord C2 exon
chr12:13355491-13355604
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGGGGCTCTGTGTTCCTCAGGGC
3' ss Score
8.92
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCCTGCAGGCCTCCCGGCTGCCTCCCACTACTCAGGGTGACGATCCAGAGGAAGAGGAGGAAGAGGAAGATGACGAGCATTTCCTGACTCAG
Seq A exon
GGCCTGGTGACTTTTGAAGATGTGGCTGTGTACTTCTCTTTGGAGGAGTGGGAGAGGCTGGATGTGGACCAACGGGACCTCTATCGGGATGTGATGCAGGAAAACTATGGGATCCTGGTTTCCTTGG
Seq C2 exon
GATACCCAATCCCTAAGCCGGATCTGATCTTCCACCTCGAACAAGGAGAAGAACCTTGGGTCGAAGACAGCCCCCATCCCGAGGAGGGAGACGTCGTCACTGGTGTCTACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001094-'1-6,'1-2,2-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.023 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCACTACTCAGGGTGAC
R:
CCGTGTAGACACCAGTGACGA
Band lengths:
186-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]