MmuEX0053211 @ mm9
Exon Skipping
Gene
ENSMUSG00000046658 | Zfp316
Description
zinc finger protein 316 [Source:MGI Symbol;Acc:MGI:1860402]
Coordinates
chr5:144024472-144025821:-
Coord C1 exon
chr5:144025730-144025821
Coord A exon
chr5:144024975-144025101
Coord C2 exon
chr5:144024472-144024585
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGGGGCTCTGTGTTCCTTAGGGC
3' ss Score
9.26
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCCTACAGACCTCCCGGGTATCTCCCACTACTCAGGATGAAGATGTGGAGGAAGAAGAGGAAGAGGAAGATGAGGAGCATTTCCTGACCCAG
Seq A exon
GGCCTGGTGACTTTTGAAGATGTGGCCGTGTACTTCTCTTTGGAGGAGTGGGAGAGGCTGGGTGTGGACCAGCGGGATCTGTACCGGGAAGTAATGCAGGAGAACTATGGGATCCTGGTCTCCTTGG
Seq C2 exon
GATACCCAATCCCTAAGCCAGATCTGATCTTCCACCTCGAACAAGGAGAAGAACCTTGGGTTGAAGATGGCCCCCATCCCGAGGAGGGAGATGTCGTCACTGGTGTCTACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046658_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.023 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACAGACCTCCCGGG
R:
CGTGTAGACACCAGTGACGAC
Band lengths:
205-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: