BtaINT0000267 @ bosTau6
Intron Retention
Description
Bos taurus sterile alpha motif and leucine zipper containing kinase AZK (ZAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001205493]
Coordinates
chr2:23475679-23475946:-
Coord C1 exon
chr2:23475916-23475946
Coord A exon
chr2:23475819-23475915
Coord C2 exon
chr2:23475679-23475818
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
CTTCTAATCGCTCCCTTCAGGTG
3' ss Score
9.57
Exon sequences
Seq C1 exon
TATTTTTGGGTTCAGCAGCTCGTCAGAAAAG
Seq A exon
GCAAGTGGAATAACTTACCTTCTTAATTCATGGAGTTAACTTTGCTGGGGACGTGATTGAGTCTAATTTTATTCTGCCTTCTAATCGCTCCCTTCAG
Seq C2 exon
GTGACTCTTCAGCAGAGATGAGTGTGTATGCAAGCTTGTTTAAGGAAAACAACATTACAGGAAAGCGACTGCTGCTTCTCGAGGAAGAAGACTTGAAAGACATGGGCATCATCTCCAAGGGGCACATCATCCATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001083:ENSBTAT00000038527:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=FE(14.1=100)
A:
NA
C2:
PF0764712=SAM_2=FE(64.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTTTGGGTTCAGCAGCTCGT
R:
AAATGGATGATGTGCCCCTTGG
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]