HsaINT0184416 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:174096920-174097187:+
Coord C1 exon
chr2:174096920-174096950
Coord A exon
chr2:174096951-174097047
Coord C2 exon
chr2:174097048-174097187
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TTTCTAATCACTTCCTTCAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
TATTGTTGGGTTCAGCAGCTCGTCAGAAAAG
Seq A exon
GCAAGTGGAATAAGTTACCTTCTTCAATCATGGAGTTAACTTTGTTTTGGATGTGATTTCATCTAATTTTATTCTGCTTTCTAATCACTTCCTTCAG
Seq C2 exon
GTGACTCTTCAGCAGAGATGAGTGTATATGCAAGCTTGTTTAAAGAAAACAACATTACAGGGAAGCGGCTGCTGCTGCTGGAGGAAGAAGACCTGAAAGACATGGGCATTGTCTCCAAGGGGCATATCATTCACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
-ZAK:NM_016653:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTGGGTTCAGCAGCTCG
R:
TGAAGTGAATGATATGCCCCTTGG
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)