GgaINT0047337 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18655690-18655980:-
Coord C1 exon
chr7:18655950-18655980
Coord A exon
chr7:18655830-18655949
Coord C2 exon
chr7:18655690-18655829
Length
120 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATAACCTCTCTTACCTTAAGGCG
3' ss Score
6.2
Exon sequences
Seq C1 exon
TTTTTCTGGATGCAACAACTTACTAGAAAAG
Seq A exon
GTAAAAGCTGTTCATGTGTACCTTCATGTTCACATTGATGAATACAAATACTTTTGTCTGTCTTTTTCTTCCCTCATCGAAAATCCTTATGGATTTCTGAATAACCTCTCTTACCTTAAG
Seq C2 exon
GCGATGCTTCTGGTGAAATGAGTGCATATGCTAGCTTGTTTAAGGAACATCATATCACTGGAAAGCGACTGCTTCTTCTAGAAGAAGAAGATTTAAAGGACATGGGAATCATTTCCAGAGGACACATCATCCATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344:ENSGALT00000015215:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=FE(14.1=100)
A:
NA
C2:
PF0053625=SAM_1=FE(64.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCTGGATGCAACAACTTACT
R:
TTTAAATGGATGATGTGTCCTCTGGA
Band lengths:
170-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]