GgaINT0047337 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSQ0]
Coordinates
chr7:16863717-16864007:-
Coord C1 exon
chr7:16863977-16864007
Coord A exon
chr7:16863857-16863976
Coord C2 exon
chr7:16863717-16863856
Length
120 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATAACCTCTCTTACCTTAAGGCG
3' ss Score
6.2
Exon sequences
Seq C1 exon
TTTTTCTGGATGCAACAACTTACTAGAAAAG
Seq A exon
GTAAAAGCTGTTCATGTGTACCTTCATGTTCACATTGATGAATACAAATACATTTGTCTGTCTTTTTCTTCCCTCATCGAAAATCCTTATGGATTTCTGAATAACCTCTCTTACCTTAAG
Seq C2 exon
GCGATGCTTCTGGTGAAATGAGTGCATATGCTAGCTTGTTTAAGGAACATCATATCACTGGAAAGCGACTGCTTCTTCTAGAAGAAGAAGATTTAAAGGACATGGGAATCATTTCCAGAGGACACATCATCCATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344:ENSGALT00000015215:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=FE(14.1=100)
A:
NA
C2:
PF0053625=SAM_1=FE(64.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCTGGATGCAACAACTTACT
R:
TTTAAATGGATGATGTGTCCTCTGGA
Band lengths:
170-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]