HsaINT0184416 @ hg38
Intron Retention
Gene
ENSG00000091436 | MAP3K20
Description
mitogen-activated protein kinase kinase kinase 20 [Source:HGNC Symbol;Acc:HGNC:17797]
Coordinates
chr2:173232192-173232459:+
Coord C1 exon
chr2:173232192-173232222
Coord A exon
chr2:173232223-173232319
Coord C2 exon
chr2:173232320-173232459
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TTTCTAATCACTTCCTTCAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
TATTGTTGGGTTCAGCAGCTCGTCAGAAAAG
Seq A exon
GCAAGTGGAATAAGTTACCTTCTTCAATCATGGAGTTAACTTTGTTTTGGATGTGATTTCATCTAATTTTATTCTGCTTTCTAATCACTTCCTTCAG
Seq C2 exon
GTGACTCTTCAGCAGAGATGAGTGTATATGCAAGCTTGTTTAAAGAAAACAACATTACAGGGAAGCGGCTGCTGCTGCTGGAGGAAGAAGACCTGAAAGACATGGGCATTGTCTCCAAGGGGCATATCATTCACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091436:ENST00000375213:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=FE(13.9=100)
A:
NA
C2:
PF0053625=SAM_1=FE(63.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTGGGTTCAGCAGCTCG
R:
TGAAGTGAATGATATGCCCCTTGG
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains