BtaINT0000789 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKN3]
Coordinates
chr13:11178843-11182516:+
Coord C1 exon
chr13:11178843-11179071
Coord A exon
chr13:11179072-11182470
Coord C2 exon
chr13:11182471-11182516
Length
3399 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TAATATTTGACTTATTTCAGACA
3' ss Score
5.69
Exon sequences
Seq C1 exon
GACTAATGAGAGGCTGGCAGAGACGAGCACCAAACTTGAGGTGGAGAAACAGCAGAACAAGTCTTTACTGAGCACTCTCACCACGAGGCCACTCCTGGAGCGCCCTGGCGTTGGAAATTTCAATAATACTCTAATTTTCAATTCAAATCTTTGTCCAAGAGCAAACCTAGAGTTTTCTACCTCAGTTCCACTCACTTCAAATAGCAGCATGATGACTTACTTGCTCAAG
Seq A exon
GTTAGTTCTAATATCTTTTTTTCCTTGGGTTTCAGATTTCTTATATGATTGATTCTTGGTTTTAATCTGAACTTCTGAGATGTTTATTTGACTTATGCACACTAAGTAAAAGCCATAATTAATGAACATTTTGATTGTTTTTCCCCTAGATTTCTCGATTTTAGAAATACTTATTAACTTCTTAAATTTCTTGAAAATCTGGATTTAAATTCTACTATAGAAATGAAACCTTATTGCCAAGTAACCGAAAGTGTACTTTGAGATGTTTGACTTACTTTCTAATTGATTTCACTTTGGCGGTGGTTCAGAATCATTTCCAAGCTCTGCTGCACCCACCGCAGTTTTTCTGCCTTTAAGCATAAGTGAATGACTGGCGTCTAAACACTAACCACTTATGGGTGATTTTTTATTTGAACAAATCCTAGATAAATCCTTTTTATGGGTTAAACAAACTTGTAATACTAAATCAAAAGATTAATTTCTAGTTTTAGATTATCATTTTTTGTCATTTTCTTACAAAGAGTACATCTTTAATTACTATTTTACTGACAGAATTTTGATTTAAATTTCTAAAACATATCTTGCTGAGCAGTTGTAGGATGTTTCTAAGTTAAATCAAATATTTAAAACCTGTAAATGAACTCACTTTTGCCTCTGTCTTGACATTACCTGGATGAATGATGACTGAGATAGTAATGACAGGGAGTCTTTAAATTGGAACTAGTTTTCATCGTGTAATCCTTGTGATTAAAATATCCAGTCAGTGCACATTAGTTTATGGTTTTGATGCTGTTTTCATGATGTTGGTGATGCAGAGAAAAGTTCAGTTCAGTTCAGTCACTCAGTCATATCTGACTCTTTGCTACCTCATGGACTGCAGCACGCCAAGCTTCCCTGTCCATCACCAACTCCTGGAGCTTACTCAGACTCATGTCCATCGAGTCGGTGAGGCCTTCCAATCGTCTCATCCTCTGTCATCCCCTTCTCTCTCCTCCTACCTTCAATCTTTCCCAGCACCAGGTTCTTTTCCAATGCATTGGTTCTTCATATCACGTGGCCAAAGTACTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAGTGAATATTCAGGACTGATTTTCTTTTGGATGCACTGGTTAGATCTCCTTGCAGTCCAAGGGAGATAGACTTTTCCAACACCACAGCTCAAAAGCATCAATTCTTTGGTACTCAGCTTTCTTTATAGTGCAACTCTCACATCCAGAGAAAAGTAGCCCTTGTTAAGTGCCGTCTCAACCTGTTTTCTCATTTGGCTTCTTGCCATCATAGAAGAGGAATCCAAGGTTTCTTTGACACCACTGCAGCTACGTTGGATCTTAGTACTTGAGAGCCGTGAACCTGGAGGATGTGCTTTAGCTGTGCAGTCACAGCGGGCCTCCGAACACTTCATCCCAAGTCAGACACTTCCCCATGCAGGCCTAAGAGGTGGAAGCAAATGCTTGATCCCTGTCCCTGGGGCAGGCTGCCTACTGCAGACCCACGTTCACAGTGCTGTGGGCACATACATCTTTTCAAAGAAGAGATTCGGAACCAAGCAAGCACTTCTTAGTTTCTTCTCCCAAACTCACCTGTTAGGTAAAACTCCCCACTTCCATGAGGAGACTAGGAGTATAACACCTCCCCTTGAAACTTTAGGCTGAGGAAATGAAGTTCAACTGCAATTTCTGACCGGATTTAGATTATAGTTGAGATTACACTCATACTTTTTTGTATATACTAACTAATGATGAGAGCTTGGATAGAAGTATGCTAGACAGTAAAGAGCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCACTAGGAGTCGGACACGACTGAGCGACTTCCCTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCTGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTTCCATCTAAGGGGTCGCACAGAGTTGGCCATGACTGAAGTGACTTAGCAGCAGCAGCAGCAGCAGACAGTAAAGAGAGATCTGTTTTGTGTTTTACATTTTGTCCTAAATAATGCAAAAAGTGGGTAATTCATTTGTTGACGAATTTTAATAAGCCAGGTTTTTATTTACCTGGAGGAAACGAACATCCTTTTGGGAATTTCTTTAGTTTTGGCCTGCTTGATTCAACTAAAGATTTTCTCCTTCAAGTTCCCTGTCCTGTGTTTAAGAAACTATTATGCTGTGTAAATTAACTATATTGACTGCTACAAATAGGAGTTAGATAAAAATTTATTCTTGTTCATGCCTTTAAGACATATAATTTAGTTCGAAAGCTACTATGTCATGTCATGCCAGAAGCATTATTGAACTATATAATAAGGTTTTACATATTCATTTTCTCTATGATTTAGTTAGAATTTATGTGTTTTTTTCTTAATATGAGGAAGTAGCTGGCATAAGACTCTGGACTCAGTAAGAAGGCCGTTGGCTTTGTTACTACTTTTGTAGAATTAGGAACTTTGACTAAATCAATGACTCTCATACCTTAAAAAAAAATTTTTTTTTCAAAATAGACAACCTTTCTTTAAAACAAAATGAAACAAAAACTGTTGCATGGAACTGTGTTATATAAAATGGAGACAAGTATAGAGCCCTTTAGATAAGGAGCGTTCAGAGACCTTGGCAGCTGTGACTTCTGTTTCTCAACTCTGCAGTGACCCCCGTGGGACCTTCTCCCTCTATGAGACATAGTTCGGAAGCTAGCACTTATGAGAGAATTCTTCTCACTAAACATCTTCAGAATTAAATCTCGCTGGTACATTGTTTTCTTGTGTATAATCTTCTCACCTTTCTATGTTTTCCTTAAATGGAAAAGTTTAAAGAAAATTGCAGCTGTGTTCTCCTTGTTAACATTCAACTTCAAACTCCTTCCTCCATTTGAACATTACCCTCACCTAGAAATCAAAATAAAGGTCTCAGAAGTACATATTTAGGGCAAGAGCTGTTGGAGAAGAAGATAGTAATCTTGTGAATCGTTCCTAGGATTACGGGTCATTCTGTAACCTCTGAAATTTTGTGTACTCGATAGACTGACATTTATTGTACTTTTATCAAATTAATCTAAATAGCATGCCATATATATGTTCTCTGTTAGCTAAAAGCAGAGTAAGTAGGAATTCATTTTCTTTTATTTATGTGATTATTTTTCTTCTACGTAATCTTCAAGTTAGGTCTAGTCTCTAAAAGTGTTATTTAAATGTCACATGTAGTAAGTTGTGTATCATTTCTATGATAATATCTCTTGTTTAACTTAAGCATAAATAATATTTGACTTATTTCAG
Seq C2 exon
ACACGGCGGAAGTTGGAAAAGAGTATAACTAGAGAACTAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004354:ENSBTAT00000011189:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF120013=DUF3496=FE(38.4=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development