BtaINT0002109 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BFL1]
Coordinates
chr3:86634615-86637607:+
Coord C1 exon
chr3:86634615-86634802
Coord A exon
chr3:86634803-86637468
Coord C2 exon
chr3:86637469-86637607
Length
2666 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTCACTTCTGTCTTCTCCAGGGC
3' ss Score
11.56
Exon sequences
Seq C1 exon
AAAAAGTCCAAGCTGAGATTGACAGGGTGCTTGGCCAATCACAACAGCCAAGCATGGCCGCTCGAGAGTCCATGCCCTACACCAACGCTGTCATCCATGAGGTGCTGCGAATGGGGAACATCATCCCTCTGAACGTGCCCCGGGAGGTGGCAGTGGACACCACCCTGGCTGGATACCACCTGCCCAAG
Seq A exon
GTAATTAGGGACTCACACCAACAGCCTCAGATCTCCAAGCTCATATTTTAAATGGTGGGATTCTCACCTGGAAAAGCGACCTGTTTTCTTGTCTTAGCGAAACACTTAAATGGGGAGAGAGAGATATAATTACTGACCTAATACTGGATATCTCTCTTCATGTGAGGTCTTCAGAACATTATCAGATCAATGGTAATTGGTGTTCTGAAGGAGAATGGAAATTCCTACGTCAAGCACGTTCAGGCAAAGGCTGAATTCTCTCTGCTGTGAGATTTCTCATTCTTTTTACTGCATGATGTGCAGGCAGCAATTCTCAGTCAGCCTTTGCCATGAAGTCCTTTTCTTTGTCATGGGAGGGCTTCTGATAGGATAGTGACTTGCCAGATTTATTTTTGGAAAATTCTGCTTCACAATCCTAGGGCTATAGAATGTTAAAATGTGAGGGACAGTTGAGACCTCCTGGGCCATCACATTAAACTGGTGTTTCTAACATAATATCCCCACAGGTATTGCCTTGACTTACAGTCTGTTGATGGGACTACCTCACAAGAGAATCAATCCAAGCCTGTGCACATTAAATATCACAAAAGGAGAGAACTAATGAATGCTTTTTAAGGAGTGGTTATGTACTATGAACTATATAGATTCTTTCAAAATGTCTTAATTCTCAATCATTCTCTTATCTTCATTTTACGAATTTGCATCAAGGCTCAGAGCTGATTGATCTTGTATTTAAGATCCCTTGGCTACAAAGTCATATGAGTTGGGTTAAAGAAATAGAAGTGTTCTGATGCCCAGGTTCATCTTTTTTGTACTACACCATGTTCTCCCACTGGAGTTGCTTCATTTGGCTTGATTTCAAGAGAGTGTTCCTGCAATTGTTCTCAGCAGGGCCCTGTTAAATTCCCTCTCCTCACAAAGGCAATTCTGCTCTCTCTCTGCCCATCACTCCTAAGGATCTCAGCAAACAGCTCTCCTCTGCCCCATAGTATCTCACCAGAACACTGCACATATACAGTACCTTGCTTTCTCGCCACCTTGGTCTATTTCTGTGGATCCAATCCAATCTGAGTCCCTCTTTGTGTATTGAACCTGGTGTTGATCTCAAGGCAAAACTGGAAGAACCTCCCTTTGGGCTCGTCTTGGTCATGGTCCCTGCAGCCCTAGAAAAAGCAGCTATTCCCGCAGTGATTGCATTTACTATTTTCTTATTGATTGACCATTTTATGGGTGAATTCTGAGGTCTAAATGATATTACGGGTGATCTTCACATATTCGTAGCAATTCAGTTAGCTCCAGAGAACCATCCTAGCTCAACAGACTGGTTCTACAAGATTTTTTTTCTGATGTAGTATTCTGTGAGGACTAGAACAAATCTCTGGGTGGGGAACTTGCAACTGGAAAATGATTACAATACAGAAATTCTGCCCACAAGAGTGAAAGTCCTGAGCCCGAAGGAATCTGGCTTTGAATGCCAGCAGCTTTTGATTGCAGGAATTCCACAGGGCTACAGGAAATATCAACTCCACTCTTGGATCATGTGCACACTAGCACTCAGGGGAAAACAGCAGTGACCTCATAAGAGACCGGACCAGACCTACCTACTAATATTGGAAGGTCTCCTGCAGAGGGAGGGGGCGACCAGGGCTCATGCCAGGGACAAAGACCCTGGCACCAGCAGGTCTAGTGAGGAAGCCAGGAAGCCACCATGTAGAAAGTTATGGGAACAAGTGGTATGATTGAGAAACTGAAAGAGGCTTGATATAGTGGGAGTGCAGGCAGAAGGACCATGACTCAGATAGAGGGCAGGTGATGTGTCCTTAATATAAGAGTGCTGGGAAATACTGGAGTGTATCTATCAGGTTCCAGATGTAGTGGATGGATAGCAGTGACAACCAAATCATGTCCAGACCTAACTCTGCTTTCCGTGTGTGAAGCACTTTGAAGCGGGGAGAGGATATAGAGTTGTAGTTAGGCCTACTGTAGGAGTGTGGACAACCAAGGTAGTAACTTGGACCAGGAAGTGGAGGACATAACATGGAGGTGATAGAATCGAGAGGAATTTCAAGGAAAAGTGGCCAGCCTGGTGAAGGATGGGATGAAAGCAGAATGAGGGAAAGGGAGGCACTAAGGAGGACTCCTGGGTTTCTTGCTGGGCACTGGGAAGGACAGTGGTTCCTTTCACTAGGTGACCTGATTCTGTCATTAAATCTTCTGTGGAATGTGCTAGACAATGACGGGAAGAGAGTTGGAGAATCTTAGATGAATGAGACATTTTTCATGTTGGAGAAGCTGCCATCTCACTGAGCAACTGGGTTGATTTTGGTCCAGAACTGCCTGCCCACTGTCACATTATTCTCTTATTGATGCACACACCTTCCTTCCCGAGTTCTACACTGGCAAGTCCCTGAAGGGATCCATTCTGCACTTGAGTAGCCACACTTCCCTGATAAAATTCCCAGCAGACAATTTCAGTGCACCATTGTAAGCTGTCCCATGGCAAGGAGCATGGTGCTAGGGGCTGGCTTCAGAAGGTGGTGAGTTGGGGAGACGGAGGGAGTTCAGGGTGCTGTCAGCCCTGGAGCCTGGGCTGCGTGAGCAGGGGGACTGCCTCTGCACACATGTGTTGTGTCCTGTCTTGCATGAGTCACTTCTGTCTTCTCCAG
Seq C2 exon
GGCACCATGGTCATGACTAACCTGACTGCACTGCACAGGGACCCCACAGAGTGGGCCACCCCTGACACCTTCAATCCAGAGCATTTTCTGGAGAATGGACAGTTTAAGAAAAGGGAATCCTTTCTGCCTTTTTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010033:ENSBTAT00000000323:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]