MmuINT0045059 @ mm9
Intron Retention
Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:95723249-95723651:-
Coord C1 exon
chr4:95723464-95723651
Coord A exon
chr4:95723388-95723463
Coord C2 exon
chr4:95723249-95723387
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTCTTTGTAACTTTCCCTAGCGG
3' ss Score
8.08
Exon sequences
Seq C1 exon
AAAATGTACAGGCTGAAATTGACCGAGTGATTGGCCAGTCGAAGCATCCCAGCCTGGCTGACAGAGACTCCATGCCCTACACCAATGCTGTTGTCCATGAAATTCTGAGAATGGGCAATAGTGTCCCTCTGAATATTCCCAGGGAAGTGGCAGTTGACACTACACTGGCTGGATTTCACTTGCCAAAG
Seq A exon
GTAAGGAGGCTCAGGCATGGGAGTTTTGTGTGTGTCTATTCCATACATTGCCTTGAGTCTTTGTAACTTTCCCTAG
Seq C2 exon
CGGTCTGTGGTCATGACCAATTTGACTGCACTGCATATGGACCCTAAAGAATGGGCCACCCCAGACATCTTCAATCCAGAGCACTTTTTGGAGAATGGACAGTTTAAGAAGAGAGAATCTTTTCTGCCATTTTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571-Cyp2j13:NM_145548:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACTCCATGCCCTACACC
R:
GGGTCCATATGCAGTGCAGTC
Band lengths:
170-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: