BtaINT0002394 @ bosTau6
Intron Retention
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98888306-98888832:-
Coord C1 exon
chr11:98888769-98888832
Coord A exon
chr11:98888366-98888768
Coord C2 exon
chr11:98888306-98888365
Length
403 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCC
5' ss Score
7.84
3' ss Seq
AGCCCTTTCGTCTCTCCTAGTCT
3' ss Score
8.37
Exon sequences
Seq C1 exon
ATCCTTTTCATCCACCGAGGGCCTGCGACAGCTGTCTCAGCAGCTCAACGGTCTTGTGTCCGAG
Seq A exon
GTACCCCGAAAACTGGAGCTCGGCATGGGTTAGAGTAGGAGGGAAAATATGCTAGAAAGAAACTGAGGCAGAGACTCCCCAAAGGAAGGGAAGATCCTGGGACCAGGCAGCTTGGCTGGATAATGTTTAGCTGATCATTACTTCTCTGAGTCTCCTCTTTGAAGCCATGCAAATGAAGGGGTTGGATGATGAGATTGGTTACATTGTTTGATCCTGCAGATAAGAGCTCTTTGGGAGGGGAGGAACAAGGGGGAACTGAGAACCAGGAGAAACTGGCACAGGGAGGGATTAAAGGGCAGGAGGCAAGTTAGGTGGAAGAGGAAATGTTGCCAGTTGATGGGGAAGGCAAGGTGCTGGAGGAGGTCAGAGAACATCTCCATGTGAGCCCTTTCGTCTCTCCTAG
Seq C2 exon
TCTTCATCTTACATCAATGGGGAGGGCCTAGCATCTCCTGCTAATATAAAGAATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317:ENSBTAT00000015044:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=NA C2=0.867
Domain overlap (PFAM):
C1:
PF0252012=DUF148=PU(18.4=72.7)
A:
NA
C2:
PF0252012=DUF148=FE(21.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development