MmuINT1019933 @ mm10
Intron Retention
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32297108-32297577:+
Coord C1 exon
chr2:32297108-32297171
Coord A exon
chr2:32297172-32297520
Coord C2 exon
chr2:32297521-32297577
Length
349 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCA
5' ss Score
6.43
3' ss Seq
TGAGGTATTGTCTCTCCTAGTCT
3' ss Score
5.66
Exon sequences
Seq C1 exon
GACTTTCTCATCGACTGAGAGTCTGCGACAACTTTCTCAACAGCTCAATGGCCTTGTGTCTGAG
Seq A exon
GTACCACAGGACTGGGACCCAGAAAGAAGGTAGAGAGGAAAGGAAAGTATGTTAGAAAATGAGGTGGGATTCTCAAGAGACTAATTCATGAGAGGCTCTTGTCATACTGGAGAAGACTTGGATTTGGACCACAATGGGCAACGTGATTTTTATCCTGGTGTGGTTTGAGGTGACAGCTGTTGAGCGGCGAGGTTGAGCCATGGCGGGAAAAGAGCCATAAGGAGTGGCACAAAGGGGGTGTGAGTGAGCAGGAAAGGAGATTCTGCTAGTTGAGGGGGAAGTAGGAGGCTGCAGGGATTAGACATTGAGGGTCACAGAGCATCTCCATGTGAGGTATTGTCTCTCCTAG
Seq C2 exon
TCTACATCCTACATCAACGGGGAGGGCCTCACATCTTCCAACATGAAGGAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546:ENSMUST00000113377:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=NA C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types