HsaINT0070403 @ hg19
Intron Retention
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131029737-131030276:-
Coord C1 exon
chr9:131030213-131030276
Coord A exon
chr9:131029797-131030212
Coord C2 exon
chr9:131029737-131029796
Length
416 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCT
5' ss Score
7.63
3' ss Seq
TGCACTCTCGTCTCTTATAGTCT
3' ss Score
9.17
Exon sequences
Seq C1 exon
GACTTTCTCATCAACCGAGAGCCTGCGACAACTCTCCCAACAGCTCAATGGTCTTGTTTGTGAG
Seq A exon
GTACCTCAGGAACTGAGGCCGAGAGCGGGGTGGGGGGAAGGGAACTATGATAGAAACTGAAGCAGGGATTCACAAGAGAGAGGGAAGATCCTGGGACCAGCCAATGTGCTGGGCAATGTTAAGGAAGTCGCCTTTTCCCTGAGCCTTCTCCCTTGAAGTTGTGCACATGAAGGAGTTGGACCCCATGACTGGTTGCATCATTGTATCCTGCTGCAGAAGCACTGGATGAGAGCTGCTCGGGAGGAAAGGATGGTGGGGAAATAAGAACCATGAGAGAAGTTGGCACAAAGGGGTTACGGGACAGAGGGTCCAAGTTAGAAAAGAAAATGTTGCCAATTGCTGGGGAAGAAACGAAGTTAGAGGGCTTAGACACTGAGGGGACAGAACATCTCCATGTGCACTCTCGTCTCTTATAG
Seq C2 exon
TCTGCGACATGTGTCAATGGGGAGGGCCCTGCATCGTCTGCTAACCTGAAGGATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-GOLGA2:NM_004486:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.642
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(15.9=100),PF113073=DUF3109=PU(16.7=72.7)
A:
NA
C2:
PF150351=Rootletin=FE(15.2=100),PF113073=DUF3109=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)