DreINT0073790 @ danRer10
Intron Retention
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1413345-1413664:-
Coord C1 exon
chr5:1413601-1413664
Coord A exon
chr5:1413405-1413600
Coord C2 exon
chr5:1413345-1413404
Length
196 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGA
5' ss Score
2.68
3' ss Seq
CTCTCCTCTGTTTAATTCAGTCA
3' ss Score
6.78
Exon sequences
Seq C1 exon
GCCGCTGTCGTCCACCGAAAGCCTCCGACAGCTCTCTCAGCAGCTCAACGGTCTGCTCTCTGAG
Seq A exon
GTCTGAATCTCTCTCCACTTCTCTGCTATCATGCTATTTTTATTATTAACACTAAATAATTATTTATTCTTTTACTAGTTATTGAAGAGAAACGCCACTACTCTGAGAGACTGGCAATTAAAATGTAATGATTTTTTACAAGCCTTATATTATAAGTGCTAATATTTGTTTTGTTTCTCTCCTCTGTTTAATTCAG
Seq C2 exon
TCATCAACACACATCAATGGTGACAGCGATCCACCCGCGGTCAATGAGAAGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197:ENSDART00000092087:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCCACCGAAAGCCTCC
R:
CCAGCTCCTTCTCATTGACCG
Band lengths:
115-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]