RnoINT0066270 @ rn6
Intron Retention
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11326437-11326903:+
Coord C1 exon
chr3:11326437-11326500
Coord A exon
chr3:11326501-11326846
Coord C2 exon
chr3:11326847-11326903
Length
346 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCA
5' ss Score
6.43
3' ss Seq
AGAGGTATTGTCTCTCCTAGTCT
3' ss Score
4.19
Exon sequences
Seq C1 exon
GACTTTCTCATCGACTGAGAGTCTGCGACAACTTTCTCAACAGCTCAATGGCCTTGTGTCTGAG
Seq A exon
GTACCACAGGACTGGGGTCCAGAGAGAAGGTAGAGAGGAAAGGAAGGCACAGTAGAAAACGAGGCAGGGATTCCCGAGCGGCTCTTGTCATGCTTGGAGAAGACCTGGATTTGGACCTCGATGGGCAATGTGATTTTATCCTGTTTATCCTGGTGTGGAAAGTTCGAGGTGACAGCTGTTGAGCAGCGGGGTTGAGCCATGGGGGTTTAGGGGCCATGAGGAGTGGCACAAGAGGGTGTGAGTGAACAGGAAAGCAGACTCTGCTAGTTGAGGGGGAATAGGAGGCTGCAGGGATTAGACAGTGAGGGTCACAGAGCATCTCCATGAGAGGTATTGTCTCTCCTAG
Seq C2 exon
TCTACATCCTACATCAACGGGGAGGGCCTCACGTCTTCCAACATGAAGGAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884:ENSRNOT00000016341:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.842
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]