BtaINT0004137 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr24:49967073-49969435:-
Coord C1 exon
chr24:49969285-49969435
Coord A exon
chr24:49967359-49969284
Coord C2 exon
chr24:49967073-49967358
Length
1926 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TAATCGCGCTTTGCTTTCAGTGT
3' ss Score
6.94
Exon sequences
Seq C1 exon
GGCTTCATGACTCAGAACACTGCAAAGCAGAATGAGCACTGTCTTAAGAACTTTGACCTCACTGAATACCGCCAGGTGCTGAGCGATCTTTCCATTCAGATCTACCAGCAGCTCATTAAAATCGCCGAGGGCCTCTTGCAGCCTATGATAG
Seq A exon
GTAAGCTGGCACTGGAGATCTCCAGTGCTCATTGTGGAGTCTGATGTGAGGGTAAGCACTCCCTCCGTTTAAGGAATTGGCTATCTTAGGACAGCCCTCAGAAAGCCCAGGCTCTTCCCAGAAAAGGCAACAAAGGAGGTGTATGCCGTCTACTCAAAAAGAGTCATGAAACTTTCAACACCAGCCCATCAAAGCTGCTTGAGTAGTGAGACTATAGATCATTTTCCCTCTATCTCCTTTTTCTGTAATGTACTGCATTATTTTTTCCCCAAACTAATTTCCATAGGTACTAAATATAAATTCAGAAAATGTAAATGCATACACAGTGACAAGATATAATACTCTTGCCCATGTATATGCTTTATTCATGGAAAAGGGAAAGAATTAAGTATGTTCATATAAATGAACACAGTAGTAAACACTCATGCAATAAATATTTATTGAACATTCTGTCCAAAGCAGGACACTTGGGCACTTGACATGATACCAGAATTGAAAAATAAGAGCAGTTATTTTTTATGTTAAAAGTAACACACATGTGCATCACTCACTGTGCTCCTTAAAGGCTGGGGAGGTTCTGAAGCACGTGGACAGTGTTTTCCCCAAGTTCTGACAGCATAAGTTGGTTGTAAGTGAATGCCAAGTAGGACAGGGTCCCACATGCCATCCAGAAATATATCCCTTGGGGTAAGATTCATTCCAAATCCTTCTTCTTCTCTGAGAATCTTCTTAGGAGGAGCTAGTTTATTCCCACCAGACATAGAGAGAACTGGGGATATTTCATGACTCAGACAAGGTGATAGTTAATTGCATCAGTTCTAGAATTGGACAGACCTGGGTTCAAAGCCTGGCCCTGCCACTTCCTGGTAGGGCAACCTTGGACAAATTATTTAATGCTTCAGTTCCCTCACTAGGAAATGGGTTGTTGGAAGATTAAAAGGAACACTGATGGAGAAGGAAATGGCAACCCACTCCAGTAATCTTGCCTGGGAAATCCCATGGACAGAGGAACCTGGTGGGCAAAGAGTCAGACACTGAGGGAGGGGCAGGCGCTTGCTAGAGGCCCCAGAGCTTTTGATGGCAGAGCCAGCACTGTGGCTGAGGACTCCTGGCTCCCAGGCCTCTCTCACCAGATAGGAGCGTGGAAAACTAGTCTAAAATACGCCTGAGGGCTTTCCTGGTGGCTCAGTGGTAAAGAATCACCCCCCTGCCAAAGCAGGGGACGTGAGTTCCACCCCTGGTCTGGGAAGGCCACACGTGGCAGAGCAGCTGAGCCCATGCATCACAGCCACTGGGCCAGGGCTCTCGAGCCGGGAGCCGCAGAACTGAGGTCTGTGGGCACCAGATCCCATGCTCCGCAACAAGAGGAGCCACAGCTAGAGAAAAGCCCACGCGGCATGAAGACCGTGCACAACCGTAAATAAAATCATTAAAAAACAAACAAAAAAAAAAAATAAAAGGAACACTGAATGTAAAGCACCTGACATGTAATTAAGTTCTGTGCATTAACTATGACAGACCAACTCACCTAAGATTTACATGGTCAGAGAGTGATGGAGAAGAGCTGTTTGAACAATTGTTGGATGATCTCAGAGTCCAGGCCCACACCCACGTTGCTCAATTCTCAAATTTTGGTCGCTCAGCACAGAAGCCAGTACAGAATTGAGTTGGTTTTACCTTTTACCTATGTCCCATCACCAATAAATTTAAGCGAAGATTTAGTCCACAGGTTTAGCTCAAGATTTCTATGTGGAAAACTTAACTCGGTTGTAGAGATCAACCTATTAGAAATCGCATGCCAAATGCTCTAAGTTCCTGAGAGTCAGCCCTGGGCAGGATCATGGCCAAAGCCTTCTGTGATCCAAGTGACCCCGAAGCTGATCTAATTTGGGAACATCCGTTGCTCTAATCGCGCTTTGCTTTCAG
Seq C2 exon
TGTCGGCCATGTTGGAGAACGAGAGCATTCAGGGTCTGTCTGGGGTGAAGCCCACGGGCTACCGGAAGCGCACCTCCAGCATGCCGGAAGGAGACAACTCGTACTGCCTGGAAGCCATCATCCGCCAGATGAACTCCTTCCACACGGTTATGTGCGACCAGGGCCTGGACCCCGAGATCATCCTGCAGGTGTTCAGACAGCTCTTCTACATGATCAACGCGGTGACGCTCAACAACCTGCTTCTGCGGAAGGACGTCTGCTCCTGGAGCACAGGCATGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455:ENSBTAT00000061584:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=PU(31.1=34.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCACTGAATACCGCCA
R:
AGAAGCAGGTTGTTGAGCGTC
Band lengths:
342-2268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]